Switched to kapt.

app/build.gradle

@@ -1,6 +1,5 @@
 apply plugin: 'com.android.application'
 apply plugin: 'kotlin-android'
-apply plugin: 'com.neenbedankt.android-apt'
 
 android {
     compileSdkVersion 24
@@ -32,9 +31,14 @@ dependencies {
 
     // https://github.com/hotchemi/PermissionsDispatcher
     compile 'com.github.hotchemi:permissionsdispatcher:2.1.3'
-    apt 'com.github.hotchemi:permissionsdispatcher-processor:2.1.3'
+    kapt 'com.github.hotchemi:permissionsdispatcher-processor:2.1.3'
     compile "org.jetbrains.kotlin:kotlin-stdlib:$kotlin_version"
 }
+
 repositories {
     mavenCentral()
 }
+
+kapt {
+    generateStubs = true
+}

app/src/main/java/android/erik/thauvin/net/permissionsdispatcherkotlinsample/MainActivity.kt

@@ -35,7 +35,7 @@ class MainActivity : AppCompatActivity() {
             if (phone.isNullOrBlank()) {
                 Snackbar.make(view, "Please enter a phone number", Snackbar.LENGTH_LONG).setAction("Action", null).show()
             } else {
-                MainActivityPermissionsDispatcher.callWithCheck(this@MainActivity, phone)
+                MainActivityPermissionsDispatcher.`call$app_compileDebugKotlinWithCheck`(this@MainActivity, phone)
             }
         }
     }