From ba24de7d080cbe084ee19d45212211c44f86acb4 Mon Sep 17 00:00:00 2001
From: Cedric Beust <cedric.beust@le.com>
Date: Mon, 27 Mar 2017 09:53:24 -0700
Subject: [PATCH 01/16] More flexible option parsing.

---
 src/main/kotlin/com/beust/kobalt/Options.kt | 109 +++++++++++++++++++-
 1 file changed, 105 insertions(+), 4 deletions(-)

diff --git a/src/main/kotlin/com/beust/kobalt/Options.kt b/src/main/kotlin/com/beust/kobalt/Options.kt
index 730321bf..4c7f6f95 100644
--- a/src/main/kotlin/com/beust/kobalt/Options.kt
+++ b/src/main/kotlin/com/beust/kobalt/Options.kt
@@ -1,36 +1,59 @@
 package com.beust.kobalt
 
 import com.beust.jcommander.JCommander
+import com.beust.kobalt.api.Kobalt
+import com.beust.kobalt.api.PluginTask
+import com.beust.kobalt.api.Project
+import com.beust.kobalt.app.ProjectFinder
 import com.beust.kobalt.app.ProjectGenerator
+import com.beust.kobalt.app.Templates
 import com.beust.kobalt.app.UpdateKobalt
 import com.beust.kobalt.app.remote.KobaltServer
 import com.beust.kobalt.internal.PluginInfo
 import com.beust.kobalt.internal.TaskManager
 import com.beust.kobalt.internal.build.BuildFile
+import com.beust.kobalt.misc.CheckVersions
 import com.beust.kobalt.misc.KFiles
 import com.beust.kobalt.wrapper.Main
+import com.google.common.collect.HashMultimap
 import com.google.inject.Inject
 import java.io.File
 import java.nio.file.Paths
 
+/**
+ * Some options require a build file, others shouldn't have one and some don't care. This
+ * class captures these requirements.
+ */
 open class Option(open val enabled: () -> Boolean, open val action: () -> Unit,
         open val requireBuildFile: Boolean = true)
 class OptionalBuildOption(override val enabled: () -> Boolean, override val action: () -> Unit)
     : Option(enabled, action, false)
 
 class Options @Inject constructor(
+        val plugins: Plugins,
+        val checkVersions: CheckVersions,
         val projectGenerator: ProjectGenerator,
         val pluginInfo: PluginInfo,
         val serverFactory: KobaltServer.IFactory,
         val updateKobalt: UpdateKobalt,
-        val taskManager: TaskManager
+        val projectFinder: ProjectFinder,
+        val taskManager: TaskManager,
+        val resolveDependency: ResolveDependency
         ) {
 
-    fun run(jc: JCommander, args: Args, argv: Array<String>) {
+    fun run(jc: JCommander, args: Args, argv: Array<String>): Int {
         val p = if (args.buildFile != null) File(args.buildFile) else KFiles.findBuildFile()
         val buildFile = BuildFile(Paths.get(p.absolutePath), p.name)
         var pluginClassLoader = javaClass.classLoader
-        val options = arrayListOf<Option>(
+
+        val allProjects =
+            if (buildFile.exists()) projectFinder.initForBuildFile(buildFile, args)
+            else emptyList<Project>()
+
+        // Modify `args` with options found in buildScript { kobaltOptions(...) }, if any
+        addOptionsFromBuild(args, Kobalt.optionsFromBuild)
+
+        val options = listOf<Option>(
                 OptionalBuildOption( { -> args.templates != null }, {
                     //
                     // --init: create a new build project and install the wrapper
@@ -48,18 +71,68 @@ class Options @Inject constructor(
                 OptionalBuildOption( { -> args.serverMode }, {
                     // --server
                     val port = serverFactory.create(args.force, args.port, { cleanUp() }).call()
+                }),
+                OptionalBuildOption( { -> args.listTemplates}, {
+                    // --listTemplates
+                    Templates().displayTemplates(pluginInfo)
+                }),
+                Option( { -> args.projectInfo }, {
+                    // --projectInfo
+                    allProjects.forEach {
+                        it.compileDependencies.filter { it.isMaven }.forEach {
+                            resolveDependency.run(it.id)
+                        }
+                    }
+                }),
+                Option( { args.dependency != null }, {
+                    // --resolve
+                    args.dependency?.let { resolveDependency.run(it) }
+                }),
+                Option( { args.tasks }, {
+                    // --tasks
+                    displayTasks()
+                }),
+                Option( { args.checkVersions }, {
+                    // --checkVersions
+                    checkVersions.run(allProjects)
+                }),
+                Option( { args.download }, {
+                    // --download
+                    updateKobalt.downloadKobalt()
                 })
         )
 
+        var processedOption = false
         options.forEach {
             if (it.enabled()) {
                 if ((it.requireBuildFile && buildFile.exists()) || ! it.requireBuildFile) {
                     it.action()
+                    processedOption = true
                 } else if (it.requireBuildFile && ! buildFile.exists()) {
-                    throw IllegalArgumentException("Couldn't find a build file")
+                    throw KobaltException("Couldn't find a build file")
                 }
             }
         }
+
+        var result = 0
+        if (! processedOption) {
+            //
+            // Launch the build
+            //
+            val runTargetResult = taskManager.runTargets(args.targets, allProjects)
+            if (result == 0) {
+                result = if (runTargetResult.taskResult.success) 0 else 1
+            }
+
+            // Shutdown all plug-ins
+            plugins.shutdownPlugins()
+
+            // Run the build report contributors
+            pluginInfo.buildReportContributors.forEach {
+                it.generateReport(Kobalt.context!!)
+            }
+        }
+        return result
     }
 
     private fun cleanUp() {
@@ -67,4 +140,32 @@ class Options @Inject constructor(
         taskManager.cleanUp()
     }
 
+    private fun addOptionsFromBuild(args: Args, optionsFromBuild: ArrayList<String>) {
+        optionsFromBuild.forEach {
+            when(it) {
+                Args.SEQUENTIAL -> args.sequential = true
+                else -> throw IllegalArgumentException("Unsupported option found in kobaltOptions(): " + it)
+            }
+        }
+    }
+
+    private fun displayTasks() {
+        //
+        // List of tasks, --tasks
+        //
+        val tasksByPlugins = HashMultimap.create<String, PluginTask>()
+        taskManager.annotationTasks.forEach {
+            tasksByPlugins.put(it.plugin.name, it)
+        }
+        val sb = StringBuffer("List of tasks\n")
+        tasksByPlugins.keySet().forEach { name ->
+            sb.append("\n  " + AsciiArt.horizontalDoubleLine + " $name "
+                    + AsciiArt.horizontalDoubleLine + "\n")
+            tasksByPlugins[name].distinctBy(PluginTask::name).sortedBy(PluginTask::name).forEach { task ->
+                sb.append("    ${task.name}\t\t${task.doc}\n")
+            }
+        }
+
+        println(sb.toString())
+    }
 }
\ No newline at end of file

From 9eeba66c3f61559e1caa57649404c9ea83063724 Mon Sep 17 00:00:00 2001
From: Cedric Beust <cedric.beust@le.com>
Date: Mon, 27 Mar 2017 10:49:23 -0700
Subject: [PATCH 02/16] More flexible option parsing.

Fixes https://github.com/cbeust/kobalt/issues/362
---
 src/main/kotlin/com/beust/kobalt/Main.kt | 140 ++---------------------
 1 file changed, 8 insertions(+), 132 deletions(-)

diff --git a/src/main/kotlin/com/beust/kobalt/Main.kt b/src/main/kotlin/com/beust/kobalt/Main.kt
index 1978ae09..34e7f467 100644
--- a/src/main/kotlin/com/beust/kobalt/Main.kt
+++ b/src/main/kotlin/com/beust/kobalt/Main.kt
@@ -3,24 +3,17 @@ package com.beust.kobalt
 import com.beust.jcommander.JCommander
 import com.beust.kobalt.api.IClasspathDependency
 import com.beust.kobalt.api.Kobalt
-import com.beust.kobalt.api.PluginTask
-import com.beust.kobalt.app.*
+import com.beust.kobalt.app.MainModule
+import com.beust.kobalt.app.UpdateKobalt
 import com.beust.kobalt.app.remote.KobaltClient
-import com.beust.kobalt.app.remote.KobaltServer
-import com.beust.kobalt.app.remote.RemoteDependencyData
-import com.beust.kobalt.internal.Gc
 import com.beust.kobalt.internal.KobaltSettings
 import com.beust.kobalt.internal.PluginInfo
-import com.beust.kobalt.internal.TaskManager
-import com.beust.kobalt.internal.build.BuildFile
 import com.beust.kobalt.maven.DependencyManager
 import com.beust.kobalt.maven.Http
 import com.beust.kobalt.maven.dependency.FileDependency
 import com.beust.kobalt.misc.*
-import com.google.common.collect.HashMultimap
 import java.io.File
 import java.net.URLClassLoader
-import java.nio.file.Paths
 import javax.inject.Inject
 
 fun main(argv: Array<String>) {
@@ -56,21 +49,15 @@ fun mainNoExit(argv: Array<String>): Int {
 
 private class Main @Inject constructor(
         val plugins: Plugins,
-        val taskManager: TaskManager,
         val http: Http,
         val files: KFiles,
         val executors: KobaltExecutors,
         val dependencyManager: DependencyManager,
-        val checkVersions: CheckVersions,
         val github: GithubApi2,
         val updateKobalt: UpdateKobalt,
         val client: KobaltClient,
         val pluginInfo: PluginInfo,
-        val projectGenerator: ProjectGenerator,
-        val serverFactory: KobaltServer.IFactory,
-        val projectFinder: ProjectFinder,
-        val dependencyData: RemoteDependencyData,
-        val resolveDependency: ResolveDependency) {
+        val options: Options) {
 
     data class RunInfo(val jc: JCommander, val args: Args)
 
@@ -98,21 +85,20 @@ private class Main @Inject constructor(
         //
         // Install plug-ins requested from the command line
         //
-        val pluginClassLoader = installCommandLinePlugins(args)
+        installCommandLinePlugins(args)
 
         if (args.client) {
             client.run()
             return 0
         }
 
-        var result = 0
+        var result = 1
         val latestVersionFuture = github.latestKobaltVersion
 
         try {
-            result = runWithArgs(jc, args, argv, pluginClassLoader)
+            result = runWithArgs(jc, args, argv)
         } catch(ex: Throwable) {
             error("", ex.cause ?: ex)
-            result = 1
         }
 
         if (!args.update) {
@@ -121,126 +107,16 @@ private class Main @Inject constructor(
         return result
     }
 
-    private fun runWithArgs(jc: JCommander, args: Args, argv: Array<String>, pluginClassLoader: ClassLoader): Int {
-//        val file = File("/Users/beust/.kobalt/repository/com/google/guava/guava/19.0-rc2/guava-19.0-rc2.pom")
-//        val md5 = Md5.toMd5(file)
-//        val md52 = MessageDigest.getInstance("MD5").digest(file.readBytes()).toHexString()
-        var result = 0
+    private fun runWithArgs(jc: JCommander, args: Args, argv: Array<String>): Int {
         val p = if (args.buildFile != null) File(args.buildFile) else KFiles.findBuildFile()
         args.buildFile = p.absolutePath
-        val buildFile = BuildFile(Paths.get(p.absolutePath), p.name)
 
         if (!args.update) {
             println(AsciiArt.banner + Kobalt.version + "\n")
         }
 
-        if (args.templates != null) {
-            //
-            // --init: create a new build project and install the wrapper
-            // Make sure the wrapper won't call us back with --noLaunch
-            //
-            projectGenerator.run(args, pluginClassLoader)
-            // The wrapper has to call System.exit() in order to set the exit code,
-            // so make sure we call it last (or possibly launch it in a separate JVM).
-            com.beust.kobalt.wrapper.Main.main(arrayOf("--noLaunch") + argv)
-        } else if (args.usage) {
-            jc.usage()
-        } else {
-            // Options that don't need Build.kt to be parsed first
-            if (args.gc) {
-                Gc().run()
-            } else if (args.update) {
-                // --update
-                updateKobalt.updateKobalt()
-            } else if (args.serverMode) {
-                // --server
-                val port = serverFactory.create(args.force, args.port, { cleanUp() }).call()
-            } else {
-                //
-                // Everything below requires to parse the build file first
-                //
-                if (!buildFile.exists()) {
-                    error(buildFile.path.toFile().path + " does not exist")
-                } else {
-                    val allProjects = projectFinder.initForBuildFile(buildFile, args)
-
-                    addOptionsFromBuild(args, Kobalt.optionsFromBuild)
-                    if (args.listTemplates) {
-                        // --listTemplates
-                        Templates().displayTemplates(pluginInfo)
-                    } else if (args.projectInfo) {
-                        // --projectInfo
-                        allProjects.forEach {
-                            it.compileDependencies.filter { it.isMaven }.forEach {
-                                resolveDependency.run(it.id)
-                            }
-                        }
-                    } else if (args.dependency != null) {
-                        // --resolve
-                        args.dependency?.let { resolveDependency.run(it) }
-                    } else if (args.tasks) {
-                        // --tasks
-                        displayTasks()
-                    } else if (args.checkVersions) {
-                        // --checkVersions
-                        checkVersions.run(allProjects)
-                    } else if (args.download) {
-                        // --download
-                        updateKobalt.downloadKobalt()
-                    } else {
-                        //
-                        // Launch the build
-                        //
-                        val runTargetResult = taskManager.runTargets(args.targets, allProjects)
-                        if (result == 0) {
-                            result = if (runTargetResult.taskResult.success) 0 else 1
-                        }
-
-                        // Shutdown all plug-ins
-                        plugins.shutdownPlugins()
-
-                        // Run the build report contributors
-                        pluginInfo.buildReportContributors.forEach {
-                            it.generateReport(Kobalt.context!!)
-                        }
-                    }
-                }
-            }
-        }
-        return result
+        return options.run(jc, args, argv)
     }
 
-    private fun addOptionsFromBuild(args: Args, optionsFromBuild: ArrayList<String>) {
-        optionsFromBuild.forEach {
-            when(it) {
-                Args.SEQUENTIAL -> args.sequential = true
-                else -> throw IllegalArgumentException("Unsupported option found in kobaltOptions(): " + it)
-            }
-        }
-    }
 
-    private fun cleanUp() {
-        pluginInfo.cleanUp()
-        taskManager.cleanUp()
-    }
-
-    private fun displayTasks() {
-        //
-        // List of tasks, --tasks
-        //
-        val tasksByPlugins = HashMultimap.create<String, PluginTask>()
-        taskManager.annotationTasks.forEach {
-            tasksByPlugins.put(it.plugin.name, it)
-        }
-        val sb = StringBuffer("List of tasks\n")
-        tasksByPlugins.keySet().forEach { name ->
-            sb.append("\n  " + AsciiArt.horizontalDoubleLine + " $name "
-                    + AsciiArt.horizontalDoubleLine + "\n")
-            tasksByPlugins[name].distinctBy(PluginTask::name).sortedBy(PluginTask::name).forEach { task ->
-                sb.append("    ${task.name}\t\t${task.doc}\n")
-            }
-        }
-
-        println(sb.toString())
-    }
 }

From 639945bf2fbdb2816ae67604cd9b02a200573db3 Mon Sep 17 00:00:00 2001
From: Cedric Beust <cedric.beust@le.com>
Date: Mon, 27 Mar 2017 10:50:24 -0700
Subject: [PATCH 03/16] 1.0.31.

---
 kobalt/wrapper/kobalt-wrapper.properties | 2 +-
 src/main/resources/kobalt.properties     | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/kobalt/wrapper/kobalt-wrapper.properties b/kobalt/wrapper/kobalt-wrapper.properties
index 9f0a84b5..eb1eddd2 100644
--- a/kobalt/wrapper/kobalt-wrapper.properties
+++ b/kobalt/wrapper/kobalt-wrapper.properties
@@ -1 +1 @@
-kobalt.version=1.0.30
+kobalt.version=1.0.31
diff --git a/src/main/resources/kobalt.properties b/src/main/resources/kobalt.properties
index 9f0a84b5..eb1eddd2 100644
--- a/src/main/resources/kobalt.properties
+++ b/src/main/resources/kobalt.properties
@@ -1 +1 @@
-kobalt.version=1.0.30
+kobalt.version=1.0.31

From 2478040bff61f353d95d5b946387b1835d855e50 Mon Sep 17 00:00:00 2001
From: Cedric Beust <cedric.beust@le.com>
Date: Mon, 27 Mar 2017 10:54:02 -0700
Subject: [PATCH 04/16] 1.0.32.

---
 kobalt/wrapper/kobalt-wrapper.properties | 2 +-
 src/main/resources/kobalt.properties     | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/kobalt/wrapper/kobalt-wrapper.properties b/kobalt/wrapper/kobalt-wrapper.properties
index eb1eddd2..77dee232 100644
--- a/kobalt/wrapper/kobalt-wrapper.properties
+++ b/kobalt/wrapper/kobalt-wrapper.properties
@@ -1 +1 @@
-kobalt.version=1.0.31
+kobalt.version=1.0.32
diff --git a/src/main/resources/kobalt.properties b/src/main/resources/kobalt.properties
index eb1eddd2..77dee232 100644
--- a/src/main/resources/kobalt.properties
+++ b/src/main/resources/kobalt.properties
@@ -1 +1 @@
-kobalt.version=1.0.31
+kobalt.version=1.0.32

From ccbfe3bd942e1389917c2ecf6d6267b4fe1e7075 Mon Sep 17 00:00:00 2001
From: Cedric Beust <cedric.beust@le.com>
Date: Mon, 27 Mar 2017 14:54:51 -0700
Subject: [PATCH 05/16] Preliminary work for multiple build files.

---
 .../beust/kobalt/internal/build/BuildFile.kt  |  20 ---
 .../com/beust/kobalt/misc/BlockExtractor.kt   |  48 +++++--
 .../kotlin/com/beust/kobalt/misc/KFiles.kt    |  21 +--
 src/main/kotlin/com/beust/kobalt/Main.kt      |   2 +-
 src/main/kotlin/com/beust/kobalt/Options.kt   |  15 +--
 .../com/beust/kobalt/app/BuildFileCompiler.kt |  42 +++---
 .../com/beust/kobalt/app/BuildScriptUtil.kt   |   8 +-
 .../com/beust/kobalt/app/ParsedBuildFile.kt   |  52 +++++---
 .../com/beust/kobalt/app/ProjectFinder.kt     |   6 +-
 .../app/remote/GetDependencyGraphHandler.kt   |  18 +--
 .../com/beust/kobalt/app/remote/KobaltHub.kt  |   8 +-
 .../com/beust/kobalt/app/remote/OldServer.kt  |   2 +-
 .../kobalt/app/remote/RemoteDependencyData.kt |  11 +-
 .../beust/kobalt/app/remote/SparkServer.kt    | 124 ------------------
 src/test/kotlin/com/beust/kobalt/BaseTest.kt  |  14 +-
 15 files changed, 137 insertions(+), 254 deletions(-)

diff --git a/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/internal/build/BuildFile.kt b/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/internal/build/BuildFile.kt
index b860f446..a2eb91e9 100644
--- a/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/internal/build/BuildFile.kt
+++ b/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/internal/build/BuildFile.kt
@@ -1,10 +1,8 @@
 package com.beust.kobalt.internal.build
 
-import com.beust.kobalt.misc.KFiles
 import java.io.File
 import java.nio.file.Files
 import java.nio.file.Path
-import java.nio.file.attribute.BasicFileAttributes
 /**
  * Sometimes, build files are moved to temporary files, so we give them a specific name for clarity.
  * @param path is the path where that file was moved, @param realPath is where the actual file is.
@@ -12,23 +10,5 @@ import java.nio.file.attribute.BasicFileAttributes
 class BuildFile(val path: Path, val name: String, val realPath: Path = path) {
     fun exists() : Boolean = Files.exists(path)
 
-    val lastModified : Long
-        get() = Files.readAttributes(realPath, BasicFileAttributes::class.java).lastModifiedTime().toMillis()
-
     val directory : File get() = path.toFile().parentFile
-
-    /**
-     * @return the .kobalt directory where this build file will be compiled.
-     */
-    val dotKobaltDir: File get() = File(directory.parentFile.parentFile, KFiles.KOBALT_DOT_DIR).apply {
-        mkdirs()
-    }
-
-    /**
-     * @return the absolute directory of this project's location, assuming the build file is in
-     * $project/kobalt/src/Build.kt.
-     */
-    val absoluteDir : File? get() {
-        return path.parent?.parent?.parent?.toFile()
-    }
 }
diff --git a/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/misc/BlockExtractor.kt b/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/misc/BlockExtractor.kt
index c2bdc557..4e92ea2a 100644
--- a/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/misc/BlockExtractor.kt
+++ b/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/misc/BlockExtractor.kt
@@ -10,7 +10,18 @@ fun main(argv: Array<String>) {
 //    BlockExtractor("plugins", '(', ')').extractBlock(lines)
 }
 
-class BuildScriptInfo(val content: String, val startLine: Int, val endLine: Int)
+class Section(val start: Int, val end: Int) {
+    override fun toString() = "$start-$end"
+}
+
+class BuildScriptInfo(val content: String, val sections: List<Section>) {
+    fun isInSection(lineNumber: Int): Boolean {
+        sections.forEach {
+            if (lineNumber >= it.start && lineNumber <= it.end) return true
+        }
+        return false
+    }
+}
 
 /**
  * Used to extract a keyword followed by opening and closing tags out of a list of strings,
@@ -26,7 +37,7 @@ class BlockExtractor(val regexp: Pattern, val opening: Char, val closing: Char)
         var foundKeyword = false
         var foundClosing = false
         var count = 0
-        val result = StringBuffer()
+        val buildScript = arrayListOf<String>()
         val topLines = arrayListOf<String>()
 
         fun updateCount(line: String) {
@@ -46,9 +57,13 @@ class BlockExtractor(val regexp: Pattern, val opening: Char, val closing: Char)
                 if (foundKeyword && count > 0) currentLine.append(c)
             }
 
-            if (currentLine.isNotEmpty()) result.append(currentLine.toString()).append("\n")
+            if (currentLine.isNotEmpty() && foundKeyword) buildScript.add(currentLine.toString())
         }
 
+        val allowedImports = listOf("com.beust", "java")
+        val disallowedImports = listOf("com.beust.kobalt.plugin")
+        val imports = arrayListOf<String>()
+        val sections = arrayListOf<Section>()
         lines.forEach { line ->
             currentLineNumber++
             val found = regexp.matcher(line).matches()
@@ -56,26 +71,33 @@ class BlockExtractor(val regexp: Pattern, val opening: Char, val closing: Char)
                 startLine = currentLineNumber
                 foundKeyword = true
                 count = 1
-                result.append(topLines.joinToString("\n")).append("\n")
-                result.append(line).append("\n")
+                buildScript.add(line)
+                topLines.add(line)
             } else {
-                val allowedImports = listOf("com.beust", "java")
-                val disallowedImports = listOf("com.beust.kobalt.plugin")
-                if (! line.startsWith("import") ||
-                        (line.startsWith("import") && allowedImports.any { line.contains(it) }
-                            && ! disallowedImports.any { line.contains(it) })) {
+                if (line.startsWith("import")) {
+                    if (allowedImports.any { line.contains(it) } && !disallowedImports.any { line.contains(it) }) {
+                        imports.add(line)
+                    }
+                } else {
                     topLines.add(line)
                 }
                 updateCount(line)
             }
 
             if (foundKeyword && foundClosing && count == 0) {
-                return BuildScriptInfo(result.toString(), startLine, endLine)
+                sections.add(Section(startLine, endLine))
+                foundKeyword = false
+                foundClosing = false
+                count = 0
+                startLine = 0
+                endLine = 0
             }
         }
 
-        if (foundKeyword && foundClosing && count == 0) {
-            return BuildScriptInfo(result.toString(), startLine, endLine)
+        if (sections.isNotEmpty()) {
+            val result = (imports.distinct() + buildScript).joinToString("\n") + "\n"
+
+            return BuildScriptInfo(result, sections)
         } else {
             return null
         }
diff --git a/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/misc/KFiles.kt b/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/misc/KFiles.kt
index e1e9a709..d78e8cff 100644
--- a/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/misc/KFiles.kt
+++ b/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/misc/KFiles.kt
@@ -3,7 +3,7 @@ package com.beust.kobalt.misc
 import com.beust.kobalt.*
 import com.beust.kobalt.api.Kobalt
 import com.beust.kobalt.api.Project
-import com.beust.kobalt.internal.build.BuildFile
+import com.beust.kobalt.internal.build.IBuildSources
 import com.beust.kobalt.maven.Md5
 import java.io.*
 import java.nio.file.Files
@@ -261,9 +261,9 @@ class KFiles {
         /**
          * The build location for build scripts is .kobalt/build
          */
-        fun findBuildScriptLocation(buildFile: BuildFile, jarFile: String) : String {
-            val result = joinDir(buildFile.dotKobaltDir.path, KFiles.SCRIPT_BUILD_DIR, jarFile)
-            kobaltLog(2, "Build file dotKobaltDir: " + buildFile.dotKobaltDir)
+        fun findBuildScriptLocation(buildSources: IBuildSources, jarFile: String) : String {
+            val result = joinDir(buildSources.root.path, KFiles.dotKobaltDir.path, KFiles.SCRIPT_BUILD_DIR, jarFile)
+            kobaltLog(2, "Build file dotKobaltDir: " + KFiles.dotKobaltDir)
             kobaltLog(2, "Script jar file: $result")
             return result
         }
@@ -387,18 +387,7 @@ class KFiles {
             }
         }
 
-        fun findBuildFile(projectRoot: String = "."): File {
-            val deprecatedLocation = File(Constants.BUILD_FILE_NAME)
-            val result: File =
-                    if (deprecatedLocation.exists()) {
-                        warn(Constants.BUILD_FILE_NAME + " is in a deprecated location, please move it to "
-                                + Constants.BUILD_FILE_DIRECTORY)
-                        deprecatedLocation
-                    } else {
-                        File(KFiles.joinDir(projectRoot, Constants.BUILD_FILE_DIRECTORY, Constants.BUILD_FILE_NAME))
-                    }
-            return result
-        }
+        val dotKobaltDir = File(KFiles.joinAndMakeDir(KFiles.KOBALT_DOT_DIR))
     }
 
     fun findRecursively(directory: File, function: Function1<String, Boolean>): List<String> {
diff --git a/src/main/kotlin/com/beust/kobalt/Main.kt b/src/main/kotlin/com/beust/kobalt/Main.kt
index 34e7f467..75f27bda 100644
--- a/src/main/kotlin/com/beust/kobalt/Main.kt
+++ b/src/main/kotlin/com/beust/kobalt/Main.kt
@@ -108,7 +108,7 @@ private class Main @Inject constructor(
     }
 
     private fun runWithArgs(jc: JCommander, args: Args, argv: Array<String>): Int {
-        val p = if (args.buildFile != null) File(args.buildFile) else KFiles.findBuildFile()
+        val p = if (args.buildFile != null) File(args.buildFile) else File(".")
         args.buildFile = p.absolutePath
 
         if (!args.update) {
diff --git a/src/main/kotlin/com/beust/kobalt/Options.kt b/src/main/kotlin/com/beust/kobalt/Options.kt
index 4c7f6f95..9b29a831 100644
--- a/src/main/kotlin/com/beust/kobalt/Options.kt
+++ b/src/main/kotlin/com/beust/kobalt/Options.kt
@@ -11,14 +11,12 @@ import com.beust.kobalt.app.UpdateKobalt
 import com.beust.kobalt.app.remote.KobaltServer
 import com.beust.kobalt.internal.PluginInfo
 import com.beust.kobalt.internal.TaskManager
-import com.beust.kobalt.internal.build.BuildFile
+import com.beust.kobalt.internal.build.BuildSources
 import com.beust.kobalt.misc.CheckVersions
-import com.beust.kobalt.misc.KFiles
 import com.beust.kobalt.wrapper.Main
 import com.google.common.collect.HashMultimap
 import com.google.inject.Inject
 import java.io.File
-import java.nio.file.Paths
 
 /**
  * Some options require a build file, others shouldn't have one and some don't care. This
@@ -42,12 +40,13 @@ class Options @Inject constructor(
         ) {
 
     fun run(jc: JCommander, args: Args, argv: Array<String>): Int {
-        val p = if (args.buildFile != null) File(args.buildFile) else KFiles.findBuildFile()
-        val buildFile = BuildFile(Paths.get(p.absolutePath), p.name)
+        val p = if (args.buildFile != null) File(args.buildFile) else File(".")
+//        val buildFile = BuildFile(Paths.get(p.absolutePath), p.name)
+        val buildSources = BuildSources(File(p.absolutePath))
         var pluginClassLoader = javaClass.classLoader
 
         val allProjects =
-            if (buildFile.exists()) projectFinder.initForBuildFile(buildFile, args)
+            if (buildSources.exists()) projectFinder.initForBuildFile(buildSources, args)
             else emptyList<Project>()
 
         // Modify `args` with options found in buildScript { kobaltOptions(...) }, if any
@@ -105,10 +104,10 @@ class Options @Inject constructor(
         var processedOption = false
         options.forEach {
             if (it.enabled()) {
-                if ((it.requireBuildFile && buildFile.exists()) || ! it.requireBuildFile) {
+                if ((it.requireBuildFile && buildSources.exists()) || ! it.requireBuildFile) {
                     it.action()
                     processedOption = true
-                } else if (it.requireBuildFile && ! buildFile.exists()) {
+                } else if (it.requireBuildFile && ! buildSources.exists()) {
                     throw KobaltException("Couldn't find a build file")
                 }
             }
diff --git a/src/main/kotlin/com/beust/kobalt/app/BuildFileCompiler.kt b/src/main/kotlin/com/beust/kobalt/app/BuildFileCompiler.kt
index 68cabd40..fa98ca10 100644
--- a/src/main/kotlin/com/beust/kobalt/app/BuildFileCompiler.kt
+++ b/src/main/kotlin/com/beust/kobalt/app/BuildFileCompiler.kt
@@ -1,7 +1,6 @@
 package com.beust.kobalt.app
 
 import com.beust.kobalt.Args
-import com.beust.kobalt.Constants
 import com.beust.kobalt.Plugins
 import com.beust.kobalt.TaskResult
 import com.beust.kobalt.api.Kobalt
@@ -12,7 +11,8 @@ import com.beust.kobalt.internal.IncrementalManager
 import com.beust.kobalt.internal.KobaltSettings
 import com.beust.kobalt.internal.ParallelLogger
 import com.beust.kobalt.internal.PluginInfo
-import com.beust.kobalt.internal.build.BuildFile
+import com.beust.kobalt.internal.build.BuildSources
+import com.beust.kobalt.internal.build.IBuildSources
 import com.beust.kobalt.internal.build.VersionFile
 import com.beust.kobalt.maven.DependencyManager
 import com.beust.kobalt.maven.PomGenerator
@@ -24,7 +24,6 @@ import com.beust.kobalt.plugin.kotlin.kotlinCompilePrivate
 import com.google.inject.assistedinject.Assisted
 import java.io.File
 import java.net.URL
-import java.nio.file.Paths
 import javax.inject.Inject
 
 /**
@@ -32,7 +31,7 @@ import javax.inject.Inject
  * 1) Extract the repos() and plugins() statements in a separate .kt and compile it into preBuildScript.jar.
  * 2) Actually build the whole Build.kt file after adding to the classpath whatever phase 1 found (plugins, repos)
  */
-class BuildFileCompiler @Inject constructor(@Assisted("buildFiles") val buildFiles: List<BuildFile>,
+class BuildFileCompiler @Inject constructor(@Assisted("buildSources") val buildSources: IBuildSources,
         @Assisted val pluginInfo: PluginInfo, val files: KFiles, val plugins: Plugins,
         val dependencyManager: DependencyManager, val pluginProperties: PluginProperties,
         val executors: KobaltExecutors, val buildScriptUtil: BuildScriptUtil, val settings: KobaltSettings,
@@ -41,7 +40,7 @@ class BuildFileCompiler @Inject constructor(@Assisted("buildFiles") val buildFil
         val parallelLogger: ParallelLogger) {
 
     interface IFactory {
-        fun create(@Assisted("buildFiles") buildFiles: List<BuildFile>, pluginInfo: PluginInfo) : BuildFileCompiler
+        fun create(@Assisted("buildSources") buildSources: IBuildSources, pluginInfo: PluginInfo) : BuildFileCompiler
     }
 
     private val SCRIPT_JAR = "buildScript.jar"
@@ -85,16 +84,17 @@ class BuildFileCompiler @Inject constructor(@Assisted("buildFiles") val buildFil
     private fun findProjects(context: KobaltContext): FindProjectResult {
         var errorTaskResult: TaskResult? = null
         val projects = arrayListOf<Project>()
-        buildFiles.forEach { buildFile ->
-            val parsedBuildFile = parseBuildFile(context, buildFile)
+        run {
+//        buildFiles.forEach { buildFile ->
+            val parsedBuildFile = parseBuildFile(context, buildSources)
             parsedBuildFiles.add(parsedBuildFile)
             val pluginUrls = parsedBuildFile.pluginUrls
-            val buildScriptJarFile = File(KFiles.findBuildScriptLocation(buildFile, SCRIPT_JAR))
+            val buildScriptJarFile = File(KFiles.findBuildScriptLocation(buildSources, SCRIPT_JAR))
 
             //
             // Save the current build script absolute directory
             //
-            context.internalContext.absoluteDir = buildFile.absoluteDir
+            context.internalContext.absoluteDir = buildSources.root
 
             // If the script jar files were generated by a different version, wipe them in case the API
             // changed in-between
@@ -109,8 +109,7 @@ class BuildFileCompiler @Inject constructor(@Assisted("buildFiles") val buildFil
             // compile it, jar it in buildScript.jar and run it
             val modifiedBuildFile = KFiles.createTempBuildFileInTempDirectory(deleteOnExit = true)
             KFiles.saveFile(modifiedBuildFile, parsedBuildFile.buildScriptCode)
-            val taskResult = maybeCompileBuildFile(context, BuildFile(Paths.get(modifiedBuildFile.path),
-                    "Modified ${Constants.BUILD_FILE_NAME}", buildFile.realPath),
+            val taskResult = maybeCompileBuildFile(context, listOf(modifiedBuildFile.path),
                     buildScriptJarFile, pluginUrls, context.internalContext.forceRecompile,
                     parsedBuildFile.containsProfiles)
             if (taskResult.success) {
@@ -130,9 +129,14 @@ class BuildFileCompiler @Inject constructor(@Assisted("buildFiles") val buildFil
                 if (errorTaskResult != null) errorTaskResult!! else TaskResult())
     }
 
-    private fun maybeCompileBuildFile(context: KobaltContext, buildFile: BuildFile, buildScriptJarFile: File,
+    private fun maybeCompileBuildFile(context: KobaltContext, buildSources: BuildSources, buildScriptJarFile: File,
+            pluginUrls: List<URL>, forceRecompile: Boolean, containsProfiles: Boolean) : TaskResult
+         = maybeCompileBuildFile(context, buildSources.findSourceFiles().map { it.path }, buildScriptJarFile,
+                pluginUrls, forceRecompile, containsProfiles)
+
+    private fun maybeCompileBuildFile(context: KobaltContext, sourceFiles: List<String>, buildScriptJarFile: File,
             pluginUrls: List<URL>, forceRecompile: Boolean, containsProfiles: Boolean) : TaskResult {
-        kobaltLog(2, "Running build file ${buildFile.name} jar: $buildScriptJarFile")
+        kobaltLog(2, "Compiling into $buildScriptJarFile")
 
         // If the user specifed --profiles, always recompile the build file since we don't know if
         // the current buildScript.jar we have contains the correct value for these profiles
@@ -141,15 +145,15 @@ class BuildFileCompiler @Inject constructor(@Assisted("buildFiles") val buildFil
         // to have a side file that describes which profiles the current buildScript.jar was
         // compiled with.
         val bs = BuildScriptJarFile(buildScriptJarFile)
-        if (! containsProfiles && !forceRecompile && buildScriptUtil.isUpToDate(buildFile, buildScriptJarFile)) {
+        if (! containsProfiles && !forceRecompile && buildScriptUtil.isUpToDate(buildSources, buildScriptJarFile)) {
             kobaltLog(2, "  Build file $buildScriptJarFile is up to date")
             return TaskResult()
         } else {
             val reason =
-                if (containsProfiles) "it contains profiles"
+                if (containsProfiles) "profiles were found"
                 else if (forceRecompile) "forceRecompile is true"
                 else "it is not up to date"
-            kobaltLog(2, "  Need to recompile ${buildFile.name} because $reason")
+            kobaltLog(2, "  Need to recompile $buildSources because $reason")
 
             buildScriptJarFile.deleteRecursively()
             val buildFileClasspath = Kobalt.buildFileClasspath.map { it.jarFile.get() }.map { it.absolutePath }
@@ -157,7 +161,7 @@ class BuildFileCompiler @Inject constructor(@Assisted("buildFiles") val buildFil
                 classpath(files.kobaltJar)
                 classpath(pluginUrls.map { it.file })
                 classpath(buildFileClasspath)
-                sourceFiles(listOf(buildFile.path.toFile().absolutePath))
+                sourceFiles(sourceFiles)
                 output = buildScriptJarFile
                 noIncrementalKotlin = true
             }.compile(context = context)
@@ -177,6 +181,6 @@ class BuildFileCompiler @Inject constructor(@Assisted("buildFiles") val buildFil
      * - the source code for the modified Build.kt (after profiles are applied)
      * - the URL's of all the plug-ins that were found.
      */
-    private fun parseBuildFile(context: KobaltContext, buildFile: BuildFile) =
-            ParsedBuildFile(buildFile, context, buildScriptUtil, dependencyManager, files)
+    private fun parseBuildFile(context: KobaltContext, buildSources: IBuildSources) =
+            ParsedBuildFile(buildSources, context, buildScriptUtil, dependencyManager, files)
 }
diff --git a/src/main/kotlin/com/beust/kobalt/app/BuildScriptUtil.kt b/src/main/kotlin/com/beust/kobalt/app/BuildScriptUtil.kt
index 55f980f8..a3af4a93 100644
--- a/src/main/kotlin/com/beust/kobalt/app/BuildScriptUtil.kt
+++ b/src/main/kotlin/com/beust/kobalt/app/BuildScriptUtil.kt
@@ -9,7 +9,7 @@ import com.beust.kobalt.api.Project
 import com.beust.kobalt.api.annotation.IncrementalTask
 import com.beust.kobalt.api.annotation.Task
 import com.beust.kobalt.internal.TaskManager
-import com.beust.kobalt.internal.build.BuildFile
+import com.beust.kobalt.internal.build.IBuildSources
 import com.beust.kobalt.misc.KFiles
 import com.beust.kobalt.misc.Topological
 import com.beust.kobalt.misc.kobaltLog
@@ -123,9 +123,9 @@ class BuildScriptUtil @Inject constructor(val plugins: Plugins, val files: KFile
         }
     }
 
-    fun isUpToDate(buildFile: BuildFile, jarFile: File) =
-            buildFile.exists() && jarFile.exists()
-                    && buildFile.lastModified < jarFile.lastModified()
+    fun isUpToDate(buildSources: IBuildSources, jarFile: File) =
+            buildSources.exists() && jarFile.exists()
+                    && buildSources.findSourceFiles().all { it.lastModified() < jarFile.lastModified() }
 
     /**
      * Make sure all the projects have a unique name.
diff --git a/src/main/kotlin/com/beust/kobalt/app/ParsedBuildFile.kt b/src/main/kotlin/com/beust/kobalt/app/ParsedBuildFile.kt
index de6fa8fc..c6d82e05 100644
--- a/src/main/kotlin/com/beust/kobalt/app/ParsedBuildFile.kt
+++ b/src/main/kotlin/com/beust/kobalt/app/ParsedBuildFile.kt
@@ -6,6 +6,8 @@ import com.beust.kobalt.api.Kobalt
 import com.beust.kobalt.api.KobaltContext
 import com.beust.kobalt.api.Project
 import com.beust.kobalt.internal.build.BuildFile
+import com.beust.kobalt.internal.build.BuildSources
+import com.beust.kobalt.internal.build.IBuildSources
 import com.beust.kobalt.internal.build.VersionFile
 import com.beust.kobalt.maven.DependencyManager
 import com.beust.kobalt.misc.BlockExtractor
@@ -16,10 +18,9 @@ import com.beust.kobalt.plugin.kotlin.kotlinCompilePrivate
 import java.io.File
 import java.net.URL
 import java.nio.charset.Charset
-import java.nio.file.Paths
 import java.util.regex.Pattern
 
-class ParsedBuildFile(val buildFile: BuildFile, val context: KobaltContext, val buildScriptUtil: BuildScriptUtil,
+class ParsedBuildFile(val buildSources: IBuildSources, val context: KobaltContext, val buildScriptUtil: BuildScriptUtil,
         val dependencyManager: DependencyManager, val files: KFiles) {
     val pluginList = arrayListOf<String>()
     val repos = arrayListOf<String>()
@@ -36,8 +37,8 @@ class ParsedBuildFile(val buildFile: BuildFile, val context: KobaltContext, val
             "import com.beust.kobalt.api.*")
     val preBuildScriptCode : String get() = preBuildScript.joinToString("\n")
 
-    private val buildScript = arrayListOf<String>()
-    val buildScriptCode : String get() = buildScript.joinToString("\n")
+    private val nonBuildScript = arrayListOf<String>()
+    val buildScriptCode : String get() = nonBuildScript.joinToString("\n")
 
     init {
         parseBuildFile()
@@ -93,12 +94,16 @@ class ParsedBuildFile(val buildFile: BuildFile, val context: KobaltContext, val
             return result
         }
 
-        val buildWithCorrectProfiles = applyProfiles(buildFile.path.toFile().readLines())
+        val buildWithCorrectProfiles = arrayListOf<String>()
+        buildSources.findSourceFiles().forEach {
+            buildWithCorrectProfiles.addAll(applyProfiles(it.readLines()))
+        }
+
         val buildScriptInfo = BlockExtractor(Pattern.compile("^val.*buildScript.*\\{"), '{', '}')
                 .extractBlock(buildWithCorrectProfiles)
 
         if (buildScriptInfo != null) {
-            kobaltLog(3, "About to compile build file:\n=====\n" + buildScriptInfo.content + "\n=====")
+            kobaltLog(2, "About to compile build file:\n=====\n" + buildScriptInfo.content + "\n=====")
             preBuildScript.add(buildScriptInfo.content)
         } else {
             repos.forEach { preBuildScript.add(it) }
@@ -107,15 +112,18 @@ class ParsedBuildFile(val buildFile: BuildFile, val context: KobaltContext, val
         }
 
         //
-        // Write the build file excluding the buildScript{} tag since we already ran it
+        // Write the build file excluding the nonBuildScript{} tag since we already ran it
         //
         var lineNumber = 1
-        buildFile.path.toFile().forEachLine { line ->
-            if (buildScriptInfo == null ||
-                    (lineNumber < buildScriptInfo.startLine || lineNumber > buildScriptInfo.endLine)) {
-                buildScript.add(correctProfileLine(line))
+        buildSources.findSourceFiles().forEach { buildFile ->
+            buildFile.forEachLine() { line ->
+                if (buildScriptInfo == null || ! buildScriptInfo.isInSection(lineNumber)) {
+                    val cpl = correctProfileLine(line)
+                    if (cpl.startsWith("import")) nonBuildScript.add(0, cpl)
+                    else nonBuildScript.add(cpl)
+                }
+                lineNumber++
             }
-            lineNumber++
         }
     }
 
@@ -131,15 +139,14 @@ class ParsedBuildFile(val buildFile: BuildFile, val context: KobaltContext, val
         //
         // Compile to preBuildScript.jar
         //
-        val buildScriptJar = KFiles.findBuildScriptLocation(buildFile, "preBuildScript.jar")
+        val buildScriptJar = KFiles.findBuildScriptLocation(buildSources, "preBuildScript.jar")
         val buildScriptJarFile = File(buildScriptJar)
 
         // Because of profiles, it's not possible to find out if a preBuildScript.jar is up to date
         // or not so recompile it every time.
 //        if (! buildScriptUtil.isUpToDate(buildFile, File(buildScriptJar))) {
             buildScriptJarFile.parentFile.mkdirs()
-            generateJarFile(context, BuildFile(Paths.get(pluginSourceFile.path), "Plugins",
-                    Paths.get(buildScriptJar)), buildScriptJarFile, buildFile)
+            generateJarFile(context, listOf(pluginSourceFile.path), buildScriptJarFile)
             VersionFile.generateVersionFile(buildScriptJarFile.parentFile)
             Kobalt.context!!.internalContext.buildFileOutOfDate = true
 //        }
@@ -157,9 +164,8 @@ class ParsedBuildFile(val buildFile: BuildFile, val context: KobaltContext, val
         }
     }
 
-    private fun generateJarFile(context: KobaltContext, buildFile: BuildFile,
-            buildScriptJarFile: File, originalFile: BuildFile) {
-
+    private fun generateJarFile(context: KobaltContext, sourceFiles: List<String>,
+            buildScriptJarFile: File, originalFile: BuildFile? = null) {
         //
         // Compile the jar file
         //
@@ -170,14 +176,18 @@ class ParsedBuildFile(val buildFile: BuildFile, val context: KobaltContext, val
         val result = kotlinCompilePrivate {
             classpath(files.kobaltJar)
             classpath(deps)
-            sourceFiles(buildFile.path.toFile().absolutePath)
+            sourceFiles(sourceFiles)
             output = outputJar
             noIncrementalKotlin = true
         }.compile(context = context)
         if (! result.success) {
-            throw KobaltException("Couldn't compile ${originalFile.realPath}:\n"
-                    + result.errorMessage)
+            val org = originalFile?.realPath ?: sourceFiles.joinToString(",")
+            throw KobaltException("Couldn't compile $org:\n" + result.errorMessage)
         }
     }
+
+    private fun generateJarFile(context: KobaltContext, buildSources: BuildSources,
+            buildScriptJarFile: File)
+        = generateJarFile(context, buildSources.findSourceFiles().map { it.path }, buildScriptJarFile)
 }
 
diff --git a/src/main/kotlin/com/beust/kobalt/app/ProjectFinder.kt b/src/main/kotlin/com/beust/kobalt/app/ProjectFinder.kt
index 4a182678..109d72d7 100644
--- a/src/main/kotlin/com/beust/kobalt/app/ProjectFinder.kt
+++ b/src/main/kotlin/com/beust/kobalt/app/ProjectFinder.kt
@@ -7,7 +7,7 @@ import com.beust.kobalt.api.IClasspathDependency
 import com.beust.kobalt.api.Kobalt
 import com.beust.kobalt.api.Project
 import com.beust.kobalt.internal.PluginInfo
-import com.beust.kobalt.internal.build.BuildFile
+import com.beust.kobalt.internal.build.BuildSources
 import com.beust.kobalt.misc.kobaltLog
 import com.google.inject.Inject
 import java.util.*
@@ -15,8 +15,8 @@ import java.util.*
 class ProjectFinder @Inject constructor(val buildFileCompilerFactory: BuildFileCompiler.IFactory,
         val pluginInfo: PluginInfo, val plugins: Plugins) {
 
-    fun initForBuildFile(buildFile: BuildFile, args: Args): List<Project> {
-        val findProjectResult = buildFileCompilerFactory.create(listOf(buildFile), pluginInfo)
+    fun initForBuildFile(buildSources: BuildSources, args: Args): List<Project> {
+        val findProjectResult = buildFileCompilerFactory.create(buildSources, pluginInfo)
                 .compileBuildFiles(args)
         if (! findProjectResult.taskResult.success) {
             throw KobaltException("Couldn't compile build file: " + findProjectResult.taskResult.errorMessage)
diff --git a/src/main/kotlin/com/beust/kobalt/app/remote/GetDependencyGraphHandler.kt b/src/main/kotlin/com/beust/kobalt/app/remote/GetDependencyGraphHandler.kt
index 8c795154..a17f5dc3 100644
--- a/src/main/kotlin/com/beust/kobalt/app/remote/GetDependencyGraphHandler.kt
+++ b/src/main/kotlin/com/beust/kobalt/app/remote/GetDependencyGraphHandler.kt
@@ -3,7 +3,7 @@ package com.beust.kobalt.app.remote
 import com.beust.kobalt.Args
 import com.beust.kobalt.api.Kobalt
 import com.beust.kobalt.app.ProjectFinder
-import com.beust.kobalt.internal.build.BuildFile
+import com.beust.kobalt.internal.build.BuildSources
 import com.beust.kobalt.internal.eventbus.ArtifactDownloadedEvent
 import com.beust.kobalt.maven.aether.Exceptions
 import com.beust.kobalt.misc.KFiles
@@ -13,6 +13,7 @@ import com.google.gson.Gson
 import org.eclipse.jetty.websocket.api.RemoteEndpoint
 import org.eclipse.jetty.websocket.api.Session
 import org.eclipse.jetty.websocket.api.WebSocketListener
+import java.io.File
 import java.nio.file.Paths
 
 /**
@@ -43,14 +44,14 @@ class GetDependencyGraphHandler : WebSocketListener {
                 errorMessage = errorMessage)))
     }
 
-    private fun findBuildFile(map: Map<String, List<String>>) : String? {
+    private fun findBuildFile(map: Map<String, List<String>>) : BuildSources? {
         val projectRoot = map[PARAMETER_PROJECT_ROOT]
         val buildFile = map[PARAMETER_BUILD_FILE]
         val result =
             if (projectRoot != null) {
-                KFiles.findBuildFile(projectRoot[0]).absolutePath
+                BuildSources(File(projectRoot[0]))
             } else if (buildFile != null) {
-                buildFile[0]
+                BuildSources(File(buildFile[0]))
             } else {
                 null
             }
@@ -59,13 +60,13 @@ class GetDependencyGraphHandler : WebSocketListener {
 
     override fun onWebSocketConnect(s: Session) {
         session = s
-        val buildFile = findBuildFile(s.upgradeRequest.parameterMap)
+        val buildSources = findBuildFile(s.upgradeRequest.parameterMap)
 
         fun <T> getInstance(cls: Class<T>) : T = Kobalt.INJECTOR.getInstance(cls)
 
         // Parse the request
         val result =
-            if (buildFile != null) {
+            if (buildSources != null) {
                 // Track all the downloads that this dependency call might trigger and
                 // send them as a progress message to the web socket
                 val eventBus = getInstance(EventBus::class.java)
@@ -84,10 +85,9 @@ class GetDependencyGraphHandler : WebSocketListener {
                     val dependencyData = getInstance(RemoteDependencyData::class.java)
                     val args = getInstance(Args::class.java)
 
-                    val allProjects = projectFinder.initForBuildFile(BuildFile(Paths.get(buildFile), buildFile),
-                            args)
+                    val allProjects = projectFinder.initForBuildFile(buildSources, args)
 
-                    dependencyData.dependenciesDataFor(buildFile, args, object : IProgressListener {
+                    dependencyData.dependenciesDataFor(buildSources, args, object : IProgressListener {
                         override fun onProgress(progress: Int?, message: String?) {
                             sendWebsocketCommand(s.remote, ProgressCommand.NAME, ProgressCommand(progress, message))
                         }
diff --git a/src/main/kotlin/com/beust/kobalt/app/remote/KobaltHub.kt b/src/main/kotlin/com/beust/kobalt/app/remote/KobaltHub.kt
index 159b07e3..75982f7d 100644
--- a/src/main/kotlin/com/beust/kobalt/app/remote/KobaltHub.kt
+++ b/src/main/kotlin/com/beust/kobalt/app/remote/KobaltHub.kt
@@ -3,8 +3,11 @@ package com.beust.kobalt.app.remote
 import com.beust.kobalt.Args
 import com.beust.kobalt.api.Kobalt
 import com.beust.kobalt.app.MainModule
+import com.beust.kobalt.homeDir
 import com.beust.kobalt.internal.KobaltSettings
+import com.beust.kobalt.internal.build.BuildSources
 import com.google.gson.Gson
+import java.io.File
 
 //enum class Command(val n: Int, val command: ICommand) {
 //    GET_DEPENDENCIES(1, Kobalt.INJECTOR.getInstance(GetDependenciesCommand::class.java)),
@@ -19,12 +22,13 @@ class KobaltHub(val dependencyData: RemoteDependencyData) {
     val args = Args()
 
     fun runCommand(n: Int) : String {
+        val buildSources = BuildSources(File(homeDir("kotlin/klaxon")))
         val data =
             when(n) {
                 1 -> Gson().toJson(
-                        dependencyData.dependenciesDataFor("/Users/beust/kotlin/klaxon/kobalt/src/Build.kt", args))
+                        dependencyData.dependenciesDataFor(buildSources, args))
                 2 -> Gson().toJson(
-                        dependencyData.dependenciesDataFor("/Users/beust/kotlin/klaxon/kobalt/src/Build.kt", args,
+                        dependencyData.dependenciesDataFor(buildSources, args,
                                 useGraph = true))
                         else -> throw RuntimeException("Unknown command")
             }
diff --git a/src/main/kotlin/com/beust/kobalt/app/remote/OldServer.kt b/src/main/kotlin/com/beust/kobalt/app/remote/OldServer.kt
index d95c9964..6636f2be 100644
--- a/src/main/kotlin/com/beust/kobalt/app/remote/OldServer.kt
+++ b/src/main/kotlin/com/beust/kobalt/app/remote/OldServer.kt
@@ -70,7 +70,7 @@ class OldServer(val initCallback: (String) -> List<Project>, val cleanUpCallback
         }
     }
 
-    private val COMMAND_CLASSES = listOf(GetDependenciesCommand::class.java, PingCommand::class.java)
+    private val COMMAND_CLASSES = listOf(PingCommand::class.java)
     private val COMMANDS = COMMAND_CLASSES.map {
         Kobalt.INJECTOR.getInstance(it).let { Pair(it.name, it) }
     }.toMap()
diff --git a/src/main/kotlin/com/beust/kobalt/app/remote/RemoteDependencyData.kt b/src/main/kotlin/com/beust/kobalt/app/remote/RemoteDependencyData.kt
index 5d2011f0..ab1c1175 100644
--- a/src/main/kotlin/com/beust/kobalt/app/remote/RemoteDependencyData.kt
+++ b/src/main/kotlin/com/beust/kobalt/app/remote/RemoteDependencyData.kt
@@ -8,7 +8,7 @@ import com.beust.kobalt.internal.DynamicGraph
 import com.beust.kobalt.internal.GraphUtil
 import com.beust.kobalt.internal.PluginInfo
 import com.beust.kobalt.internal.TaskManager
-import com.beust.kobalt.internal.build.BuildFile
+import com.beust.kobalt.internal.build.BuildSources
 import com.beust.kobalt.maven.DependencyManager
 import com.beust.kobalt.misc.KFiles
 import com.beust.kobalt.misc.KobaltExecutors
@@ -16,7 +16,6 @@ import com.beust.kobalt.misc.StringVersion
 import com.beust.kobalt.misc.log
 import com.google.inject.Inject
 import java.io.File
-import java.nio.file.Paths
 
 interface IProgressListener {
     /**
@@ -29,7 +28,7 @@ class RemoteDependencyData @Inject constructor(val executors: KobaltExecutors, v
         val buildFileCompilerFactory: BuildFileCompiler.IFactory, val pluginInfo: PluginInfo,
         val taskManager: TaskManager) {
 
-    fun dependenciesDataFor(buildFilePath: String, args: Args, progressListener: IProgressListener? = null,
+    fun dependenciesDataFor(buildSources: BuildSources, args: Args, progressListener: IProgressListener? = null,
             useGraph : Boolean = false): GetDependenciesData {
         val projectDatas = arrayListOf<ProjectData>()
 
@@ -41,8 +40,8 @@ class RemoteDependencyData @Inject constructor(val executors: KobaltExecutors, v
         fun allDeps(l: List<IClasspathDependency>, name: String) = dependencyManager.transitiveClosure(l,
                 requiredBy = name)
 
-        val buildFile = BuildFile(Paths.get(buildFilePath), "GetDependenciesCommand")
-        val buildFileCompiler = buildFileCompilerFactory.create(listOf(buildFile), pluginInfo)
+//        val buildFile = BuildFile(Paths.get(buildFilePath), "GetDependenciesCommand")
+        val buildFileCompiler = buildFileCompilerFactory.create(buildSources, pluginInfo)
         val projectResult = buildFileCompiler.compileBuildFiles(args)
 
         val pluginDependencies = projectResult.pluginUrls.map { File(it.toURI()) }.map {
@@ -125,7 +124,7 @@ class RemoteDependencyData @Inject constructor(val executors: KobaltExecutors, v
                 .map { toDependencyData2("testCompile", it)}
         }
 
-        val projectRoot = File(buildFilePath).parentFile.parentFile.parentFile
+        val projectRoot = buildSources.file
 
         val allTasks = hashSetOf<TaskData>()
         projectResult.projects.withIndex().forEach { wi ->
diff --git a/src/main/kotlin/com/beust/kobalt/app/remote/SparkServer.kt b/src/main/kotlin/com/beust/kobalt/app/remote/SparkServer.kt
index 5aaf90fb..49f3e4a1 100644
--- a/src/main/kotlin/com/beust/kobalt/app/remote/SparkServer.kt
+++ b/src/main/kotlin/com/beust/kobalt/app/remote/SparkServer.kt
@@ -1,25 +1,13 @@
 package com.beust.kobalt.app.remote
 
-import com.beust.kobalt.Args
 import com.beust.kobalt.api.ITemplate
-import com.beust.kobalt.api.Kobalt
-import com.beust.kobalt.app.ProjectFinder
 import com.beust.kobalt.app.Templates
 import com.beust.kobalt.internal.PluginInfo
-import com.beust.kobalt.internal.build.BuildFile
-import com.beust.kobalt.internal.eventbus.ArtifactDownloadedEvent
-import com.beust.kobalt.maven.aether.Exceptions
 import com.google.common.collect.ListMultimap
-import com.google.common.eventbus.EventBus
-import com.google.common.eventbus.Subscribe
 import com.google.gson.Gson
-import org.eclipse.jetty.websocket.api.RemoteEndpoint
-import org.eclipse.jetty.websocket.api.Session
-import org.eclipse.jetty.websocket.api.WebSocketListener
 import spark.ResponseTransformer
 import spark.Route
 import spark.Spark
-import java.nio.file.Paths
 import java.util.concurrent.Executors
 
 class SparkServer(val cleanUpCallback: () -> Unit, val pluginInfo : PluginInfo) : KobaltServer.IServer {
@@ -45,7 +33,6 @@ class SparkServer(val cleanUpCallback: () -> Unit, val pluginInfo : PluginInfo)
     override fun run(port: Int) {
         log.debug("Server running")
         Spark.port(port)
-        Spark.webSocket("/v1/getDependencies", GetDependenciesHandler::class.java)
         Spark.webSocket("/v1/getDependencyGraph", GetDependencyGraphHandler::class.java)
         Spark.get("/ping") { req, res ->
             log.debug("  Received ping")
@@ -63,30 +50,6 @@ class SparkServer(val cleanUpCallback: () -> Unit, val pluginInfo : PluginInfo)
             }
         })
 
-        //
-        // The /v0 endpoints are deprecated and will eventually be removed
-        // (replaced by /v1 which uses WebSockets
-        jsonRoute("/v0/getDependencies", Route { request, response ->
-            val buildFile = request.queryParams("buildFile")
-            val result =
-                if (buildFile != null) {
-                    try {
-                        val dependencyData = Kobalt.INJECTOR.getInstance(RemoteDependencyData::class.java)
-                        val args = Kobalt.INJECTOR.getInstance(Args::class.java)
-
-                        dependencyData.dependenciesDataFor(buildFile, args)
-                    } catch(ex: Exception) {
-                        RemoteDependencyData.GetDependenciesData(errorMessage = ex.message)
-                    } finally {
-                        cleanUpCallback()
-                    }
-                } else {
-                    RemoteDependencyData.GetDependenciesData(
-                            errorMessage = "buildFile wasn't passed in the query parameter")
-                }
-            cleanUpCallback()
-            result
-        })
         jsonRoute("/v0/getTemplates", Route { request, response ->
             TemplatesData.create(Templates().getTemplates(pluginInfo))
         })
@@ -94,93 +57,6 @@ class SparkServer(val cleanUpCallback: () -> Unit, val pluginInfo : PluginInfo)
     }
 }
 
-/**
- * Manage the websocket endpoint "/v1/getDependencies".
- */
-@Deprecated(message = "Replaced with GetDependencyGraphHandler")
-class GetDependenciesHandler : WebSocketListener {
-    // The SparkJava project refused to merge https://github.com/perwendel/spark/pull/383
-    // so I have to do dependency injections manually :-(
-    val projectFinder = Kobalt.INJECTOR.getInstance(ProjectFinder::class.java)
-
-    var session: Session? = null
-
-    override fun onWebSocketClose(code: Int, reason: String?) {
-        println("ON CLOSE $code reason: $reason")
-    }
-
-    override fun onWebSocketError(cause: Throwable?) {
-        Exceptions.printStackTrace(cause!!)
-        throw UnsupportedOperationException()
-    }
-
-    fun <T> sendWebsocketCommand(endpoint: RemoteEndpoint, commandName: String, payload: T) {
-        endpoint.sendString(Gson().toJson(WebSocketCommand(commandName, payload = Gson().toJson(payload))))
-    }
-
-    override fun onWebSocketConnect(s: Session) {
-        session = s
-        val buildFileParams = s.upgradeRequest.parameterMap["buildFile"]
-        if (buildFileParams != null) {
-            val buildFile = buildFileParams[0]
-
-            fun <T> getInstance(cls: Class<T>) : T = Kobalt.INJECTOR.getInstance(cls)
-
-            val result = if (buildFile != null) {
-                // Track all the downloads that this dependency call might trigger and
-                // send them as a progress message to the web socket
-                val eventBus = getInstance(EventBus::class.java)
-                val busListener = object {
-                    @Subscribe
-                    fun onArtifactDownloaded(event: ArtifactDownloadedEvent) {
-                        sendWebsocketCommand(s.remote, ProgressCommand.NAME,
-                                ProgressCommand(null, "Downloaded " + event.artifactId))
-                    }
-                }
-                eventBus.register(busListener)
-
-                // Get the dependencies for the requested build file and send progress to the web
-                // socket for each project
-                try {
-                    val dependencyData = getInstance(RemoteDependencyData::class.java)
-                    val args = getInstance(Args::class.java)
-
-                    val allProjects = projectFinder.initForBuildFile(BuildFile(Paths.get(buildFile), buildFile),
-                            args)
-
-                    dependencyData.dependenciesDataFor(buildFile, args, object : IProgressListener {
-                        override fun onProgress(progress: Int?, message: String?) {
-                            sendWebsocketCommand(s.remote, ProgressCommand.NAME, ProgressCommand(progress, message))
-                        }
-                    })
-                } catch(ex: Throwable) {
-                    ex.printStackTrace()
-                    val errorMessage = ex.stackTrace.map { it.toString() }.joinToString("\n<p>")
-                    RemoteDependencyData.GetDependenciesData(errorMessage = errorMessage)
-                } finally {
-                    SparkServer.cleanUpCallback()
-                    eventBus.unregister(busListener)
-                }
-            } else {
-                RemoteDependencyData.GetDependenciesData(
-                        errorMessage = "buildFile wasn't passed in the query parameter")
-            }
-            sendWebsocketCommand(s.remote, RemoteDependencyData.GetDependenciesData.NAME, result)
-            s.close()
-        }
-    }
-
-    override fun onWebSocketText(message: String?) {
-        println("RECEIVED TEXT: $message")
-        session?.remote?.sendString("Response: $message")
-    }
-
-    override fun onWebSocketBinary(payload: ByteArray?, offset: Int, len: Int) {
-        println("RECEIVED BINARY: $payload")
-    }
-
-}
-
 class ProgressCommand(val progress: Int? = null, val message: String? = null) {
     companion object {
         val NAME = "ProgressCommand"
diff --git a/src/test/kotlin/com/beust/kobalt/BaseTest.kt b/src/test/kotlin/com/beust/kobalt/BaseTest.kt
index 97a08242..0ec243ab 100644
--- a/src/test/kotlin/com/beust/kobalt/BaseTest.kt
+++ b/src/test/kotlin/com/beust/kobalt/BaseTest.kt
@@ -6,7 +6,7 @@ import com.beust.kobalt.app.BuildFileCompiler
 import com.beust.kobalt.internal.JvmCompilerPlugin
 import com.beust.kobalt.internal.KobaltPluginXml
 import com.beust.kobalt.internal.PluginInfo
-import com.beust.kobalt.internal.build.BuildFile
+import com.beust.kobalt.internal.build.SingleFileBuildSources
 import com.beust.kobalt.misc.KFiles
 import com.beust.kobalt.misc.log
 import org.testng.annotations.BeforeClass
@@ -70,11 +70,11 @@ open class BaseTest(val compilerFactory: BuildFileCompiler.IFactory? = null) {
         val actualBuildFile = createBuildFile(projectDirectory)
         val tmpBuildFile = createBuildFile(Files.createTempDirectory("").toFile().absolutePath)
 
-        val thisBuildFile = BuildFile(Paths.get(tmpBuildFile.absolutePath), "Build.kt",
-                Paths.get(actualBuildFile.absolutePath))
-        Kobalt.context?.log(2, "About to compile build file "
-                + thisBuildFile.path + " " + thisBuildFile.realPath
-                + ".kobaltDir: " + thisBuildFile.dotKobaltDir)
+        val thisBuildFile = SingleFileBuildSources(tmpBuildFile)
+//            , "Build.kt",
+//                Paths.get(actualBuildFile.absolutePath))
+        Kobalt.context?.log(2, "About to compile build file $thisBuildFile"
+                + ".kobaltDir: " + KFiles.dotKobaltDir)
         args.apply {
             buildFile = actualBuildFile.absolutePath
             noIncremental = true
@@ -84,7 +84,7 @@ open class BaseTest(val compilerFactory: BuildFileCompiler.IFactory? = null) {
         val pluginInfo = PluginInfo(KobaltPluginXml(), null, null).apply {
             projectContributors.add(jvmCompilerPlugin)
         }
-        return compilerFactory!!.create(listOf(thisBuildFile), pluginInfo).compileBuildFiles(args,
+        return compilerFactory!!.create(thisBuildFile, pluginInfo).compileBuildFiles(args,
                 forceRecompile = true)
     }
 

From 19a782d62a6dcde3aeb73fcadbd4b3c31c7f05ec Mon Sep 17 00:00:00 2001
From: Cedric Beust <cedric.beust@le.com>
Date: Mon, 27 Mar 2017 15:06:25 -0700
Subject: [PATCH 06/16] Revert "Allow ParallelLogger to log from apply()."

This reverts commit 67dd7e54e9ff2f8a0ad0ba67a5695a69b4bd52dc.
---
 .../com/beust/kobalt/internal/ParallelLogger.kt     | 13 ++++---------
 1 file changed, 4 insertions(+), 9 deletions(-)

diff --git a/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/internal/ParallelLogger.kt b/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/internal/ParallelLogger.kt
index 4062c91d..7fda0eac 100644
--- a/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/internal/ParallelLogger.kt
+++ b/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/internal/ParallelLogger.kt
@@ -32,17 +32,15 @@ class ParallelLogger @Inject constructor(val args: Args) : ILogger {
             val newLine: Boolean)
     private val logLines = ConcurrentHashMap<CharSequence, ArrayList<LogLine>>()
 
-    private val runningProjects = ConcurrentLinkedQueue<CharSequence>()
+    private val runningProjects = ConcurrentLinkedQueue<String>()
     var startTime: Long? = null
 
     fun onProjectStarted(name: String) {
         if (startTime == null) {
             startTime = System.currentTimeMillis()
         }
-        if (! runningProjects.contains(name)) {
-            runningProjects.add(name)
-            logLines[name] = arrayListOf()
-        }
+        runningProjects.add(name)
+        logLines[name] = arrayListOf()
         if (currentName == null) {
             currentName = name
         }
@@ -76,7 +74,7 @@ class ParallelLogger @Inject constructor(val args: Args) : ILogger {
     }
 
     val LOCK = Any()
-    var currentName: CharSequence? = null
+    var currentName: String? = null
         set(newName) {
             field = newName
         }
@@ -121,9 +119,6 @@ class ParallelLogger @Inject constructor(val args: Args) : ILogger {
         if (args.sequential) {
             kobaltLog(level, message, newLine)
         } else {
-            if (! runningProjects.contains(tag)) {
-                runningProjects.add(tag)
-            }
             addLogLine(tag, LogLine(tag, level, message, Type.LOG, newLine))
         }
     }

From 1b2e25991fdf61d996277eae8890ba53d97085e5 Mon Sep 17 00:00:00 2001
From: Cedric Beust <cedric.beust@le.com>
Date: Mon, 27 Mar 2017 15:14:06 -0700
Subject: [PATCH 07/16] Silly file was being gitignored.

---
 .../kobalt/internal/build/BuildSources.kt     | 55 +++++++++++++++++++
 1 file changed, 55 insertions(+)
 create mode 100644 modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/internal/build/BuildSources.kt

diff --git a/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/internal/build/BuildSources.kt b/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/internal/build/BuildSources.kt
new file mode 100644
index 00000000..9b3d6e89
--- /dev/null
+++ b/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/internal/build/BuildSources.kt
@@ -0,0 +1,55 @@
+package com.beust.kobalt.internal.build
+
+import com.beust.kobalt.homeDir
+import java.io.File
+import java.nio.file.*
+import java.nio.file.attribute.BasicFileAttributes
+
+interface IBuildSources {
+    fun findSourceFiles() : List<File>
+    val root: File
+    fun exists(): Boolean
+}
+
+class SingleFileBuildSources(val file: File) : IBuildSources {
+    override fun exists() = file.exists()
+    override fun findSourceFiles() = listOf(file)
+    override val root: File = file.parentFile.parentFile
+}
+
+class BuildSources(val file: File) : IBuildSources {
+
+    override val root = file
+
+    override fun findSourceFiles() : List<File> {
+        return listOf(/* "kobalt/src/a.kt",  */ "kobalt/src/Build.kt")
+                .map(::File)
+//                .map { BuildFile(Paths.get(it), it)}
+    }
+
+    override fun exists() = findSourceFiles().isNotEmpty()
+
+    fun _findSourceFiles() : List<File> {
+        val result = arrayListOf<File>()
+        Files.walkFileTree(Paths.get(file.absolutePath), object : SimpleFileVisitor<Path>() {
+            override fun preVisitDirectory(dir: Path?, attrs: BasicFileAttributes?): FileVisitResult {
+                if (dir != null) {
+                    val path = dir.toFile()
+                    println(path.name)
+                    if (path.name == "src" && path.parentFile.name == "kobalt") {
+                        val sources = path.listFiles().filter { it.name.endsWith(".kt")}
+                        result.addAll(sources)
+                    }
+                }
+
+                return FileVisitResult.CONTINUE
+            }
+        })
+        return result
+    }
+}
+
+fun main(args: Array<String>) {
+    val sources = BuildSources(File(homeDir("kotlin/kobalt"))).findSourceFiles()
+    println("sources: " + sources)
+}
\ No newline at end of file

From 148a75d9946f8725b16cbe4c82ccb262695bd090 Mon Sep 17 00:00:00 2001
From: Cedric Beust <cedric.beust@le.com>
Date: Mon, 27 Mar 2017 15:14:18 -0700
Subject: [PATCH 08/16] .gitignore.

---
 .gitignore | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/.gitignore b/.gitignore
index 881a3193..6d6a56f8 100644
--- a/.gitignore
+++ b/.gitignore
@@ -2,13 +2,12 @@
 annotations
 .idea/*
 *.iml
-buildScript
+nonBuildScript
 kobaltBuild
 local.properties
 classes
 libs
 .kobalt/
-./build/
 out
 .DS_Store
 lib/kotlin-*

From b3585f48cb2a98e077cc91a1bcf61670ab98e42e Mon Sep 17 00:00:00 2001
From: Cedric Beust <cedric.beust@le.com>
Date: Mon, 27 Mar 2017 15:19:10 -0700
Subject: [PATCH 09/16] No longer used

---
 .../app/remote/GetDependenciesCommand.kt      | 29 -------------------
 1 file changed, 29 deletions(-)
 delete mode 100644 src/main/kotlin/com/beust/kobalt/app/remote/GetDependenciesCommand.kt

diff --git a/src/main/kotlin/com/beust/kobalt/app/remote/GetDependenciesCommand.kt b/src/main/kotlin/com/beust/kobalt/app/remote/GetDependenciesCommand.kt
deleted file mode 100644
index 039fc828..00000000
--- a/src/main/kotlin/com/beust/kobalt/app/remote/GetDependenciesCommand.kt
+++ /dev/null
@@ -1,29 +0,0 @@
-package com.beust.kobalt.app.remote
-
-import com.beust.kobalt.Args
-import com.beust.kobalt.api.Project
-import com.beust.kobalt.internal.remote.ICommand
-import com.beust.kobalt.internal.remote.ICommandSender
-import com.google.gson.Gson
-import com.google.gson.JsonObject
-import javax.inject.Inject
-
-/**
- * This command returns the list of dependencies for the given buildFile.
- * Payload:
- * { "name" : "getDependencies", "buildFile": "/Users/beust/kotlin/kobalt/kobalt/src/Build.kt" }
- * The response is a GetDependenciesData.
- */
-@Deprecated(message = "Only used by old server, to be deleted")
-class GetDependenciesCommand @Inject constructor(val args: Args, val dependencyData: RemoteDependencyData) : ICommand {
-
-    override val name = "getDependencies"
-
-    override fun run(sender: ICommandSender, received: JsonObject, initCallback: (String) -> List<Project>) {
-        val buildFile = received.get("buildFile").asString
-        val projects = initCallback(buildFile)
-        val dd = dependencyData.dependenciesDataFor(buildFile, args)
-        val data = toCommandData(Gson().toJson(dd), dd.errorMessage)
-        sender.sendData(data)
-    }
-}
\ No newline at end of file

From b62dc25f8b4b03e2f3015da3f3c6b9870042e51a Mon Sep 17 00:00:00 2001
From: Cedric Beust <cedric.beust@le.com>
Date: Mon, 27 Mar 2017 15:44:40 -0700
Subject: [PATCH 10/16] No longer needed.

---
 .../internal/remote/GetDependenciesCommand.kt      | 14 --------------
 1 file changed, 14 deletions(-)
 delete mode 100644 modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/internal/remote/GetDependenciesCommand.kt

diff --git a/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/internal/remote/GetDependenciesCommand.kt b/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/internal/remote/GetDependenciesCommand.kt
deleted file mode 100644
index 7422c493..00000000
--- a/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/internal/remote/GetDependenciesCommand.kt
+++ /dev/null
@@ -1,14 +0,0 @@
-package com.beust.kobalt.internal.remote
-
-import com.beust.kobalt.Constants
-import java.io.PrintWriter
-import java.net.Socket
-
-fun main(argv: Array<String>) {
-    Socket("localhost", 1234).use { socket ->
-        (PrintWriter(socket.outputStream, true)).use { out ->
-            out.println("""{ "name" : "getDependencies", "buildFile":
-            "/Users/beust/kotlin/kobalt/kobalt/src/${Constants.BUILD_FILE_NAME}"}""")
-        }
-    }
-}
\ No newline at end of file

From 32dc14e3937c4a3210b13fde05025ec9459edb43 Mon Sep 17 00:00:00 2001
From: Cedric Beust <cedric.beust@le.com>
Date: Mon, 27 Mar 2017 15:44:47 -0700
Subject: [PATCH 11/16] toString()

---
 .../main/kotlin/com/beust/kobalt/internal/build/BuildSources.kt | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/internal/build/BuildSources.kt b/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/internal/build/BuildSources.kt
index 9b3d6e89..63a8d5be 100644
--- a/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/internal/build/BuildSources.kt
+++ b/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/internal/build/BuildSources.kt
@@ -29,6 +29,8 @@ class BuildSources(val file: File) : IBuildSources {
 
     override fun exists() = findSourceFiles().isNotEmpty()
 
+    override fun toString() = "{BuildSources " + findSourceFiles()[0] + "...}"
+
     fun _findSourceFiles() : List<File> {
         val result = arrayListOf<File>()
         Files.walkFileTree(Paths.get(file.absolutePath), object : SimpleFileVisitor<Path>() {

From 76fdd1543a564a28cb44a7461127b223cef7cf31 Mon Sep 17 00:00:00 2001
From: Cedric Beust <cedric.beust@le.com>
Date: Mon, 27 Mar 2017 15:44:57 -0700
Subject: [PATCH 12/16] Rephrase.

---
 src/main/kotlin/com/beust/kobalt/app/BuildFileCompiler.kt | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/src/main/kotlin/com/beust/kobalt/app/BuildFileCompiler.kt b/src/main/kotlin/com/beust/kobalt/app/BuildFileCompiler.kt
index fa98ca10..47221787 100644
--- a/src/main/kotlin/com/beust/kobalt/app/BuildFileCompiler.kt
+++ b/src/main/kotlin/com/beust/kobalt/app/BuildFileCompiler.kt
@@ -152,7 +152,7 @@ class BuildFileCompiler @Inject constructor(@Assisted("buildSources") val buildS
             val reason =
                 if (containsProfiles) "profiles were found"
                 else if (forceRecompile) "forceRecompile is true"
-                else "it is not up to date"
+                else "it's been modified"
             kobaltLog(2, "  Need to recompile $buildSources because $reason")
 
             buildScriptJarFile.deleteRecursively()
@@ -166,7 +166,6 @@ class BuildFileCompiler @Inject constructor(@Assisted("buildSources") val buildS
                 noIncrementalKotlin = true
             }.compile(context = context)
 
-
             //
             // Generate the file that contains the list of active profiles for this build file
             //

From e4d883890d8d2f0032a422a51436867f9c3f81cb Mon Sep 17 00:00:00 2001
From: Cedric Beust <cedric.beust@le.com>
Date: Mon, 27 Mar 2017 15:45:25 -0700
Subject: [PATCH 13/16] =?UTF-8?q?Don=E2=80=99t=20generate=20preBuildScript?=
 =?UTF-8?q?.jar=20if=20no=20buildScript{}.?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 .../com/beust/kobalt/app/ParsedBuildFile.kt   | 42 ++++++++++---------
 1 file changed, 23 insertions(+), 19 deletions(-)

diff --git a/src/main/kotlin/com/beust/kobalt/app/ParsedBuildFile.kt b/src/main/kotlin/com/beust/kobalt/app/ParsedBuildFile.kt
index c6d82e05..64f60c28 100644
--- a/src/main/kotlin/com/beust/kobalt/app/ParsedBuildFile.kt
+++ b/src/main/kotlin/com/beust/kobalt/app/ParsedBuildFile.kt
@@ -6,14 +6,10 @@ import com.beust.kobalt.api.Kobalt
 import com.beust.kobalt.api.KobaltContext
 import com.beust.kobalt.api.Project
 import com.beust.kobalt.internal.build.BuildFile
-import com.beust.kobalt.internal.build.BuildSources
 import com.beust.kobalt.internal.build.IBuildSources
 import com.beust.kobalt.internal.build.VersionFile
 import com.beust.kobalt.maven.DependencyManager
-import com.beust.kobalt.misc.BlockExtractor
-import com.beust.kobalt.misc.KFiles
-import com.beust.kobalt.misc.kobaltLog
-import com.beust.kobalt.misc.warn
+import com.beust.kobalt.misc.*
 import com.beust.kobalt.plugin.kotlin.kotlinCompilePrivate
 import java.io.File
 import java.net.URL
@@ -41,11 +37,13 @@ class ParsedBuildFile(val buildSources: IBuildSources, val context: KobaltContex
     val buildScriptCode : String get() = nonBuildScript.joinToString("\n")
 
     init {
-        parseBuildFile()
-        initPluginUrls()
+        val buildScriptInfo = parseBuildFile()
+        if (buildScriptInfo != null) {
+            initPluginUrls(buildScriptInfo)
+        }
     }
 
-    private fun parseBuildFile() {
+    private fun parseBuildFile() : BuildScriptInfo? {
         /**
          * If the current line matches one of the profiles, turn the declaration into
          * val profile = true, otherwise return the same line
@@ -62,7 +60,8 @@ class ParsedBuildFile(val buildSources: IBuildSources, val context: KobaltContex
                     return Pair(profile == variable, variable)
                 }
 
-                if ((matcher != null && matcher.groups.size > 0) || (oldMatcher != null && oldMatcher.groups.size> 0)) {
+                if ((matcher != null && matcher.groups.isNotEmpty())
+                        || (oldMatcher != null && oldMatcher.groups.isNotEmpty())) {
                     containsProfiles = true
                     val match = profileMatch(matcher)
                     val oldMatch = profileMatch(oldMatcher)
@@ -94,11 +93,17 @@ class ParsedBuildFile(val buildSources: IBuildSources, val context: KobaltContex
             return result
         }
 
+        //
+        // Take all the build files and adjust them with the active profiles
+        //
         val buildWithCorrectProfiles = arrayListOf<String>()
         buildSources.findSourceFiles().forEach {
             buildWithCorrectProfiles.addAll(applyProfiles(it.readLines()))
         }
 
+        //
+        // Now extract all the `buildScript{}` blocks from all these build files
+        //
         val buildScriptInfo = BlockExtractor(Pattern.compile("^val.*buildScript.*\\{"), '{', '}')
                 .extractBlock(buildWithCorrectProfiles)
 
@@ -106,13 +111,14 @@ class ParsedBuildFile(val buildSources: IBuildSources, val context: KobaltContex
             kobaltLog(2, "About to compile build file:\n=====\n" + buildScriptInfo.content + "\n=====")
             preBuildScript.add(buildScriptInfo.content)
         } else {
+            kobaltLog(2, "Didn't find any buildScript{} section, no preBuildScript.jar necessary")
             repos.forEach { preBuildScript.add(it) }
             pluginList.forEach { preBuildScript.add(it) }
             buildFileClasspath.forEach { preBuildScript.add(it) }
         }
 
         //
-        // Write the build file excluding the nonBuildScript{} tag since we already ran it
+        // Write the build file excluding the buildScript{} tag since we already ran it
         //
         var lineNumber = 1
         buildSources.findSourceFiles().forEach { buildFile ->
@@ -125,16 +131,18 @@ class ParsedBuildFile(val buildSources: IBuildSources, val context: KobaltContex
                 lineNumber++
             }
         }
+
+        return buildScriptInfo
     }
 
-    private fun initPluginUrls() {
+    private fun initPluginUrls(buildScriptInfo: BuildScriptInfo?) {
         //
         // Compile and run preBuildScriptCode, which contains all the plugins() calls extracted. This
         // will add all the dynamic plugins found in this code to Plugins.dynamicPlugins
         //
-        val pluginSourceFile = KFiles.createTempBuildFileInTempDirectory(deleteOnExit = true)
-        pluginSourceFile.writeText(preBuildScriptCode, Charset.defaultCharset())
-        kobaltLog(2, "Saved " + KFiles.fixSlashes(pluginSourceFile.absolutePath))
+        val buildScriptSourceFile = KFiles.createTempBuildFileInTempDirectory(deleteOnExit = true)
+        buildScriptSourceFile.writeText(preBuildScriptCode, Charset.defaultCharset())
+        kobaltLog(2, "Saved " + KFiles.fixSlashes(buildScriptSourceFile.absolutePath))
 
         //
         // Compile to preBuildScript.jar
@@ -146,7 +154,7 @@ class ParsedBuildFile(val buildSources: IBuildSources, val context: KobaltContex
         // or not so recompile it every time.
 //        if (! buildScriptUtil.isUpToDate(buildFile, File(buildScriptJar))) {
             buildScriptJarFile.parentFile.mkdirs()
-            generateJarFile(context, listOf(pluginSourceFile.path), buildScriptJarFile)
+            generateJarFile(context, listOf(buildScriptSourceFile.path), buildScriptJarFile)
             VersionFile.generateVersionFile(buildScriptJarFile.parentFile)
             Kobalt.context!!.internalContext.buildFileOutOfDate = true
 //        }
@@ -185,9 +193,5 @@ class ParsedBuildFile(val buildSources: IBuildSources, val context: KobaltContex
             throw KobaltException("Couldn't compile $org:\n" + result.errorMessage)
         }
     }
-
-    private fun generateJarFile(context: KobaltContext, buildSources: BuildSources,
-            buildScriptJarFile: File)
-        = generateJarFile(context, buildSources.findSourceFiles().map { it.path }, buildScriptJarFile)
 }
 

From 43bc211b2e4b0027fea7b40a0f45124ee041e481 Mon Sep 17 00:00:00 2001
From: Cedric Beust <cedric.beust@le.com>
Date: Mon, 27 Mar 2017 16:04:29 -0700
Subject: [PATCH 14/16] Better logging.

---
 .../src/main/kotlin/com/beust/kobalt/misc/KFiles.kt            | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/misc/KFiles.kt b/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/misc/KFiles.kt
index d78e8cff..2fcdbed4 100644
--- a/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/misc/KFiles.kt
+++ b/modules/kobalt-plugin-api/src/main/kotlin/com/beust/kobalt/misc/KFiles.kt
@@ -263,8 +263,7 @@ class KFiles {
          */
         fun findBuildScriptLocation(buildSources: IBuildSources, jarFile: String) : String {
             val result = joinDir(buildSources.root.path, KFiles.dotKobaltDir.path, KFiles.SCRIPT_BUILD_DIR, jarFile)
-            kobaltLog(2, "Build file dotKobaltDir: " + KFiles.dotKobaltDir)
-            kobaltLog(2, "Script jar file: $result")
+            kobaltLog(2, "  Script jar file: $result")
             return result
         }
 

From 4b5a7c30938ec4e01d7b7b9ce0c9995241af3780 Mon Sep 17 00:00:00 2001
From: Cedric Beust <cedric.beust@le.com>
Date: Mon, 27 Mar 2017 16:04:48 -0700
Subject: [PATCH 15/16] Clean up ParsedBuildFile.

---
 .../com/beust/kobalt/app/BuildFileCompiler.kt |  2 +-
 .../com/beust/kobalt/app/ParsedBuildFile.kt   | 66 +++++++++----------
 2 files changed, 33 insertions(+), 35 deletions(-)

diff --git a/src/main/kotlin/com/beust/kobalt/app/BuildFileCompiler.kt b/src/main/kotlin/com/beust/kobalt/app/BuildFileCompiler.kt
index 47221787..3c88892d 100644
--- a/src/main/kotlin/com/beust/kobalt/app/BuildFileCompiler.kt
+++ b/src/main/kotlin/com/beust/kobalt/app/BuildFileCompiler.kt
@@ -108,7 +108,7 @@ class BuildFileCompiler @Inject constructor(@Assisted("buildSources") val buildS
             // Write the modified Build.kt (e.g. maybe profiles were applied) to a temporary file,
             // compile it, jar it in buildScript.jar and run it
             val modifiedBuildFile = KFiles.createTempBuildFileInTempDirectory(deleteOnExit = true)
-            KFiles.saveFile(modifiedBuildFile, parsedBuildFile.buildScriptCode)
+            KFiles.saveFile(modifiedBuildFile, parsedBuildFile.nonBuildScriptCode)
             val taskResult = maybeCompileBuildFile(context, listOf(modifiedBuildFile.path),
                     buildScriptJarFile, pluginUrls, context.internalContext.forceRecompile,
                     parsedBuildFile.containsProfiles)
diff --git a/src/main/kotlin/com/beust/kobalt/app/ParsedBuildFile.kt b/src/main/kotlin/com/beust/kobalt/app/ParsedBuildFile.kt
index 64f60c28..d633ba3c 100644
--- a/src/main/kotlin/com/beust/kobalt/app/ParsedBuildFile.kt
+++ b/src/main/kotlin/com/beust/kobalt/app/ParsedBuildFile.kt
@@ -18,28 +18,33 @@ import java.util.regex.Pattern
 
 class ParsedBuildFile(val buildSources: IBuildSources, val context: KobaltContext, val buildScriptUtil: BuildScriptUtil,
         val dependencyManager: DependencyManager, val files: KFiles) {
-    val pluginList = arrayListOf<String>()
-    val repos = arrayListOf<String>()
-    val buildFileClasspath = arrayListOf<String>()
-    val profileLines = arrayListOf<String>()
-    val pluginUrls = arrayListOf<URL>()
-    val projects = arrayListOf<Project>()
-    val activeProfiles = arrayListOf<String>()
+    private val profileLines = arrayListOf<String>()
+    private val projects = arrayListOf<Project>()
+    private val activeProfiles = arrayListOf<String>()
+    private val preBuildScriptJar = KFiles.findBuildScriptLocation(buildSources, "preBuildScript.jar")
+    private val preBuildScriptJarFile = File(preBuildScriptJar)
+    private val nonBuildScript = arrayListOf<String>()
 
     var containsProfiles = false
+    val pluginUrls = arrayListOf<URL>()
 
-    private val preBuildScript = arrayListOf(
-            "import com.beust.kobalt.*",
-            "import com.beust.kobalt.api.*")
-    val preBuildScriptCode : String get() = preBuildScript.joinToString("\n")
-
-    private val nonBuildScript = arrayListOf<String>()
-    val buildScriptCode : String get() = nonBuildScript.joinToString("\n")
+    /**
+     * Contains the addition of all the build files corrected with the active profiles and with
+     * the buildScripts{} sections removed.
+     */
+    val nonBuildScriptCode : String get() = nonBuildScript.joinToString("\n")
 
     init {
+        // Because profiles may have changed between two builds, we have to delete preBuildScript.jar file
+        // every time and then generate a new one (or skip that phase if no buildScript{} was found in the
+        // buid files)
+        preBuildScriptJarFile.delete()
+
         val buildScriptInfo = parseBuildFile()
+
+        // Only generate preBuildScript.jar if we found at least one buildScript{}
         if (buildScriptInfo != null) {
-            initPluginUrls(buildScriptInfo)
+            parseBuildScriptInfo(buildScriptInfo)
         }
     }
 
@@ -107,18 +112,8 @@ class ParsedBuildFile(val buildSources: IBuildSources, val context: KobaltContex
         val buildScriptInfo = BlockExtractor(Pattern.compile("^val.*buildScript.*\\{"), '{', '}')
                 .extractBlock(buildWithCorrectProfiles)
 
-        if (buildScriptInfo != null) {
-            kobaltLog(2, "About to compile build file:\n=====\n" + buildScriptInfo.content + "\n=====")
-            preBuildScript.add(buildScriptInfo.content)
-        } else {
-            kobaltLog(2, "Didn't find any buildScript{} section, no preBuildScript.jar necessary")
-            repos.forEach { preBuildScript.add(it) }
-            pluginList.forEach { preBuildScript.add(it) }
-            buildFileClasspath.forEach { preBuildScript.add(it) }
-        }
-
         //
-        // Write the build file excluding the buildScript{} tag since we already ran it
+        // Write the build file to `nonBuildScript` excluding the buildScript{} directives since we already ran them
         //
         var lineNumber = 1
         buildSources.findSourceFiles().forEach { buildFile ->
@@ -135,34 +130,35 @@ class ParsedBuildFile(val buildSources: IBuildSources, val context: KobaltContex
         return buildScriptInfo
     }
 
-    private fun initPluginUrls(buildScriptInfo: BuildScriptInfo?) {
+    /**
+     * Generate preBuildScript.jar based on the buildScript{} found in the build files.
+     */
+    private fun parseBuildScriptInfo(buildScriptInfo: BuildScriptInfo) {
         //
         // Compile and run preBuildScriptCode, which contains all the plugins() calls extracted. This
         // will add all the dynamic plugins found in this code to Plugins.dynamicPlugins
         //
         val buildScriptSourceFile = KFiles.createTempBuildFileInTempDirectory(deleteOnExit = true)
-        buildScriptSourceFile.writeText(preBuildScriptCode, Charset.defaultCharset())
+        buildScriptSourceFile.writeText(buildScriptInfo.content, Charset.defaultCharset())
         kobaltLog(2, "Saved " + KFiles.fixSlashes(buildScriptSourceFile.absolutePath))
 
         //
         // Compile to preBuildScript.jar
         //
-        val buildScriptJar = KFiles.findBuildScriptLocation(buildSources, "preBuildScript.jar")
-        val buildScriptJarFile = File(buildScriptJar)
 
         // Because of profiles, it's not possible to find out if a preBuildScript.jar is up to date
         // or not so recompile it every time.
 //        if (! buildScriptUtil.isUpToDate(buildFile, File(buildScriptJar))) {
-            buildScriptJarFile.parentFile.mkdirs()
-            generateJarFile(context, listOf(buildScriptSourceFile.path), buildScriptJarFile)
-            VersionFile.generateVersionFile(buildScriptJarFile.parentFile)
+            preBuildScriptJarFile.parentFile.mkdirs()
+            generateJarFile(context, listOf(buildScriptSourceFile.path), preBuildScriptJarFile)
+            VersionFile.generateVersionFile(preBuildScriptJarFile.parentFile)
             Kobalt.context!!.internalContext.buildFileOutOfDate = true
 //        }
 
         //
         // Run preBuildScript.jar to initialize plugins and repos
         //
-        projects.addAll(buildScriptUtil.runBuildScriptJarFile(buildScriptJarFile, arrayListOf<URL>(), context))
+        projects.addAll(buildScriptUtil.runBuildScriptJarFile(preBuildScriptJarFile, arrayListOf<URL>(), context))
 
         //
         // All the plug-ins are now in Plugins.dynamicPlugins, download them if they're not already
@@ -192,6 +188,8 @@ class ParsedBuildFile(val buildSources: IBuildSources, val context: KobaltContex
             val org = originalFile?.realPath ?: sourceFiles.joinToString(",")
             throw KobaltException("Couldn't compile $org:\n" + result.errorMessage)
         }
+
+        context.internalContext.noIncrementalKotlin = saved
     }
 }
 

From 34a544febd0a6e3b5375ad5c45c871539a64f281 Mon Sep 17 00:00:00 2001
From: Cedric Beust <cedric.beust@le.com>
Date: Mon, 27 Mar 2017 16:07:28 -0700
Subject: [PATCH 16/16] Not needed.

---
 .../kotlin/com/beust/kobalt/app/ParsedBuildFile.kt  | 13 ++++---------
 1 file changed, 4 insertions(+), 9 deletions(-)

diff --git a/src/main/kotlin/com/beust/kobalt/app/ParsedBuildFile.kt b/src/main/kotlin/com/beust/kobalt/app/ParsedBuildFile.kt
index d633ba3c..a67967bf 100644
--- a/src/main/kotlin/com/beust/kobalt/app/ParsedBuildFile.kt
+++ b/src/main/kotlin/com/beust/kobalt/app/ParsedBuildFile.kt
@@ -145,15 +145,10 @@ class ParsedBuildFile(val buildSources: IBuildSources, val context: KobaltContex
         //
         // Compile to preBuildScript.jar
         //
-
-        // Because of profiles, it's not possible to find out if a preBuildScript.jar is up to date
-        // or not so recompile it every time.
-//        if (! buildScriptUtil.isUpToDate(buildFile, File(buildScriptJar))) {
-            preBuildScriptJarFile.parentFile.mkdirs()
-            generateJarFile(context, listOf(buildScriptSourceFile.path), preBuildScriptJarFile)
-            VersionFile.generateVersionFile(preBuildScriptJarFile.parentFile)
-            Kobalt.context!!.internalContext.buildFileOutOfDate = true
-//        }
+        preBuildScriptJarFile.parentFile.mkdirs()
+        generateJarFile(context, listOf(buildScriptSourceFile.path), preBuildScriptJarFile)
+        VersionFile.generateVersionFile(preBuildScriptJarFile.parentFile)
+        Kobalt.context!!.internalContext.buildFileOutOfDate = true
 
         //
         // Run preBuildScript.jar to initialize plugins and repos